Carnosine and anserine are two major dipeptides found in chicken meat and play an important role in keeping steady acidity physiologically. Both dipeptide have been shown to be able to chelate transition metal ions and scavenge free radical produced in lipid oxidation, therefore both dipeptide can be used as an antioxidant in food. The research was designed to isolate both dipeptides from washing filtrate from mechanical deboned chicken meat. After heating and centrifuge to remove most of denatured water-soluble protein, the filtrate was further to hollow fiber ultrafiltration to remove residual protein. Sulphopropyl column was then used to remove most of free amino acids and ferric ion. Carnosine and anserine recovered from sulphopropyl column could be separated and purified by HPLC-C18.The procedure is easy to operate and the can be applied to plant-scale production.