The current traceability system certifies traceability accuracy by on-site examination or sampling inspection to promote food safety. However, such an afterward test and trace model no longer guarantees food safety. The food safety scandals that happened in the past few years called into question the effectiveness of the entire examination system. An instantaneous tracking and tracing system will significantly lower the usage of substandard products and low-price substitutes at the marketing stage and prevent dishonest conduct in traceability-related businesses. This study designed a new tracking system incorporating logistic codes and tracking codes to enhance the current agricultural produce's security mechanism and the food traceability certification system. This mechanism adopts the virtual correlation model to reduce certification costs. It provides a complete and sound real-time tracking system for society and the industry to safeguard consumer rights and promote the competitiveness of qualified businesses.