In recent years, drought events hit Taoyuan area frequently and brought immense impacts to agricultural sector. Indeed, it is difficult for decision makers to make an appropriate decision under uncertainty, in particular when alternatives differ substantially from each other. This study presents a decision analysis integrated into a drought early warning system (DEWS) for timing of fallow. For demonstration, the decision analysis procedures were effectively applied to historical years from dry condition to wet situation. The implementation of such a stem proves that the decision analysis can help the water authorities to make a suitable decision while confronting drought threats.