The Japanese eel Anguilla japonica is one of the most important food fish in Taiwan. For cultivation, elvers of the eel are caught from the wild population in estuaries during their upstream migration. The relationship between recruitment timing of elvers and surface seawater temperature was analyzed based on the daily catch data of elvers in an estuary of northeastern Taiwan since 1980. It was found that most elvers recruited to the estuary during the period from December to January, with a rhythmic activity that follows the lunar cycle. However, the peak recruitment period in the years of 1986-87, 1990-91 and 1995-96 occurred in March, delayed approximately two months. This delay coincided with low temperature years. The low surface seawater temperature, in winter, in the continental shelf area of Taiwan may influence the recruitment period of the elvers in estuaries.