It is well known that a perforated-wall caisson breakwater does not only reduce the wave reflection but also the wave forces when comparing to a traditional caisson breakwater. In this paper, the numerical simulation was presented to investigate the characteristics of waves on the caisson breakwater with a trapezoidal wav-chamber. The three-dimensional RANS with RNG turbulent model was applied for the numerical simulation. The turbulent energy dissipation, wave reflection and the wave pressure distribution were analyzed. The numerical results of wave profiles and pressure variations were first verified with the experimental data. The numerical simulations show obvious reduction of the wave reflection and the wave force induced by the wave-chamber. The results indicated that the wave reflection from the trapezoidal wave-chamber and the wave force on the breakwater is minimal when B/L is about 0.15 where L is the wavelength and B is the width of wave chamber.