- 期刊
- OpenAccess
Discovered DNAs of Protein with Using Parallel Prefixspan Method
並列摘要
Discovery of Sequential pattern mining is an important data mining mission with wide applications. There is no model that used multi coring techniques for parallel mining of closed sequential patterns. The parallelization of a prefixspan method to discover DNAs is proposed in this study. The prefixspan method is used to extract the frequent pattern from a sequence database. This system requires the use of multiple computers connected in local area network. This algorithm includes multi-coring to achieve communication between a master process and multiple slave processes. This algorithm applies dynamic scheduling to avoid tasks idling. Moreover we employ a technique, called selective sampling. We implement this algorithm with using a 4G memory and AMD phenomX4. Our experimental results show that this algorithm attains good efficiencies on motifs extraction.
延伸閱讀
- 馬君瑋（2007）。Normal Mode Analysis on all α and all β proteins〔碩士論文，亞洲大學〕。華藝線上圖書館。https://www.airitilibrary.com/Article/Detail?DocID=U0118-0807200916271561
- 柯清瑀（2005）。Classifying protein fragment of unknown structure base on amino acid sequence pattern〔碩士論文，國立臺灣大學〕。華藝線上圖書館。https://doi.org/10.6342/NTU.2005.00220
- V., M. L., G., G. C., B., V., A., C., & H., M. (2006). Bifactorial Design Applied to Recombinant Protein Expression. Journal of Data Science, 4(2), 247-255. https://doi.org/10.6339/JDS.2006.04(2).240
- Wong, Y. M. (2005). Expression and functional analysis of a mutant sPDZD2 protein [master's thesis, The University of Hong Kong]. Airiti Library. https://www.airitilibrary.com/Article/Detail?DocID=U0029-1812201200017758
- 張天豪（2004）。A Study on Expediting Analysis of Protein Substructures〔碩士論文，國立臺灣大學〕。華藝線上圖書館。https://doi.org/10.6342/NTU.2004.01042