The development of new and stable gene carrier is of great importance to improve the tranfection efficiency and achieve to certain fundamental needs in gene therapy such as therapeutic protein formation, immunogenicity enhancement and apoptosis induction. The stability and applicability of the system, which contains single-walled carbon nanotube (SWNCT) to combine with certain sequence of plasmid DNA (EGFp-C1), was examined by computer simulation. Raman spectroscopy was used as supporting information to verify the process and phenomenon of complex formation. Two diamine molecules, 1,4-diaminobutane and polyoxyethylene bis-amine, were applied in order to load positive charges onto the surface of SWCNT under physiology condition and also enhance the binding ability of CNT to EGFp-C1. The formation of peptide bond was examined with FTIR spectroscopy to confirm the result of crossliking. Concentration of surface functional groups was checked with TGA, which found that they are at an extremely low concentration but show great influence on the physical property. Full-scale cell compatibility was evaluated through LDH, MTT, Total DNA and IL-6 release. The binding efficiency of functionalized SWCNT to EGFp-C1 was analyzed through the binding strength under electrophoresis. The cell viability assay found that functionalized SWCNT show no LDH release and increase the mitochondrial activity. The release of IL-6 indicates protrusion of SWCNT through cell membrane as possible mechanism. Gene expression for in-vitro transfection was examined by fluorescence microscopy.