Pseudomonas aeruginosa (PAO1) are Gram-negative bacteria and can survive in versatile habitats. The two-component systems (2CSs) help the bacteria to adapt changing environmental conditions. The 2CSs are responsible for regulating the synthesis of virulence factors, controling antibiotic susceptibility, the translocation of metabolites and ions, and biofilm formation. A 2CS often has a sensor histidine kinase and a response regulator. When bacteria detect stimulants in the environment, a series of signal transduction will be switched on. Protein members participate in the signal pathway including sensor, Hpt and response regulator proteins. In this study, we focus on the hybrid 2CS which exists in the PAO1. We cloned and purified the response regulator PA3346 proteins, and utlized the circular dichroism (CD) spectroscopy to estimate the secondary structure of the PA3346 protein. Furthermore, the isothermal titration calorimetry (ITC) experiment was performed to investigate the interaction between HptB and PA3346. Finally, the internet-based tool for structure modeling, SWISS-MODEL, was used to model the 3D structure of PA3346. Our results showed that the PA3346 is a protein with almostα-helix structure. Future experiments will be required to elucidate the detailed mode of interaction between PA3346 and HptB.