The thrust terms are in the equations of three forces and pitching moment of flight motion equations. For a desktop flight simulator to simulate the flight trajectory, flight attitudes, and dynamic stability characteristics of the jet transport flight in six degrees of freedom, the accuracy in predictions of thrust is quite important. This paper presents an engineering approach for a jet transport thrust model being set up through a fuzzy-logic algorithm. To establish a fuzzy-logic thrust model with a limited set of data, it is necessary to identify the best model structure. An example of comparative analysis for the resulting thrust model with three different sets of the optimal model structure before the refinement process of modeling is presented in this paper. The best model structure can make the fuzzy-logic model more accurate in estimating the thrust output.