We report the case of a 45-year-old man who received definitive chemoradiotherapy for nasopharyngeal carcinoma. Three months after chemoradiotherapy, head-and-neck magnetic resonance imaging (MRI) showed multiple residual lymph nodes with what appeared to be metastases in the neck. However, 18-fluoro-2-deoxyglucose positron emission tomography (FDG-PET) produced nonspecific findings. We performed a confirmatory modified radical neck dissection; and pathologic examination revealed metastatic carcinoma, consistent with nasopharyngeal origin. The dramatic false-negative results were obtained on FDG-PET images more than 3 months after chemoradiotherapy. We conclude that functional studies need to be interpreted with caution within short intervals after definitive chemoradiotherapy even after 3 months.