The rice seed three-step propagation and certification system as well as professional rice nursery center had established better techniques for rice nursery. However, a lot of rice seeds and seedlings should be treated in a short period, the troubles resulted from diseases and insect pests had been noticed. Good seed field management brought the quality of rice seed, and reduced the damage of rice Bakanae disease and white-tip disease, which were dispersed by rice seed. It was important to practice rice seed sterilization for control different kinds of rice diseases and nematode. The nursery soil had carried a lot of soil-habitat pathogens resulted in seedling blight in nursery boxes. It was necessary to select the optimal fungicides matching up different situations. Some diseases and insect pests occurred in rice paddy field could be controlled by treating nursery boxes before transplanting and reduced the control cost effectively. Otherwise, it is very important to develop the management practices for disease and insect pests of seed and seedling on rice organic cultivation in the future.