The present case report describes an unusual case of bilateral hypertropia caused by bilateral superior rectus hypertrophy after total thyroidectomy for thyroid cancer. A 54-year-old male underwent total thyroidectomy in March 2015 for thyroid cancer. One year later, thyroid-associated ophthalmopathy (TAO) was noted. Orbital computed tomography (CT) revealed bilateral isolated superior rectus (SR) hypertrophy (right > left). In July 2016, the patient underwent bilateral SR recession, following which his eye position became orthophoric in the primary position. This is an unusual manifestation of TAO presenting as restrictive hypertropia due to bilateral isolated superior rectus hypertrophy in a patient that underwent total thyroidectomy for thyroid cancer. Hypertropia can be successfully managed by bilateral muscle recession surgery, with subsequent improvement of the primary eye position and the patient's quality of life.