The naturalistic Qi-based philosophy in Ming and Qing dynasties, and its appearance in the classical interpretation have seldom been noticed and studied in Taiwan academic circles until now. This essay discusses the interpretations of the Analects by the philosophers of the naturalistic Qi-based philosophy in Ming and Qing dynasties. Obviously, there had already been a clear and definite interpretation paradigm which is different from Zhuzi's in the interpretations of the Analects by the philosophers of the naturalistic Qi-based philosophy in Ming and Qing dynasties. And there should have been a new breakthrough in the research on the classical study of Qing dynasty if we would take the naturalistic Qi-based philosophy in Ming and Qing dynasties as a interpretation paradigm.