Capillary electrophoresis (CE) has recently achieved prominence as a very effective separation technique for analyzing large numbers of chiral and positional isomers in many research fields. The studies of molecular recognition process with artificial receptors to improve the bioavailabilities of drugs become more and more useful models in pharmaceutical industry. The mechanism of this guest- host model can be evaluated by applying the cyclodextrins (CDs) as receptors with the separation of the enantiomers by CE. In this article, the determination of binging constants by CE with measuring the change in electrophoretic mobility of a solute through buffer solution containing dissolved complexation agents is introduced, and the calculation of the stoichiometry for the inclusion complexes is also discussed.