肝細胞癌4q染色體精細輿圖分析：初步分析

Fine Mapping of Hepatocellular Carcinoma Susceptibility Gene on 4q: Preliminary Analysis

林琦鈞(Ci-Jyun Lin)

指導教授 ： 于明暉

國立臺灣大學/公共衛生學院/流行病學研究所/碩士(2005年)

https://doi.org/10.6342/NTU.2005.02699

摘要

背景與目的：肝細胞癌(hepatocellular carcinoma, HCC)為一種受到許多環境與遺傳因子影響之複雜性疾病。過去已有許多的loss-of-heterozygosity的研究指出在4q染色體上存在與HBV相關之HCC抑癌基因。本研究室先前的連鎖分析已在4q25位置發現初步顯著連鎖訊息。
材料與方法：我們以連鎖高峰為中心橫跨10 cM區域進行相關性研究，選擇14個單核苷多型性(single nucleotide polymorphism, SNPs)標記，分別對989名HBsAg陽性男性病例及956名HBsAg陽性之男性對照個案進行分析。
結果：以發病年齡進行分層分析，我們發現在發病年齡介於41~50歲之早發型的HCC中，SNP2在發病年齡介於41~50歲中，即使在校正多重檢定後仍具有顯著意義(P =.0003)。以相鄰標記進行半套體分析中，發現SNP1-SNP2在發病年齡介於41~50歲 (P value=.0006)及SNP8-SNP9在發病年齡>60歲 (P value=.0009)之半套体經過校正多重檢定後仍具有顯著意義。
結論：本研究發現SNP1-SNP2及SNP9-SNP9半套體和HCC顯著相關，但由於本研究的基因標記之分佈密度不夠密集，且涵蓋的區域不夠廣闊，未來有必要選取分佈更密且涵蓋更廣的SNP標記進行分析。

關鍵字

肝癌 ； 4q染色體 ； 精細輿圖分析

並列摘要

Background and Aim: Hepatocellular carcinoma (HCC) is a complex disease involving both environmental and genetic factors. Several loss-of-heterozygosity studies have suggested the existence of a tumor suppressor gene for HBV-related HCC on chromosome 4q. Our previous linkage study in HCC multiplex families has found a significant linkage signal on 4q25. The aim of this present study was to finely map the presumed HCC-susceptibility locus on 4q by using a large-scale case-control study.
Materials and Method: A total of 989 male HBsAg-positive HCC cases and 956 age-sex matched HBsAg-positive controls were included. We analyzed 14 single nucleotide polymorphisms (SNPs) distributed throughout the 2-HLOD-drop internal (~10 cM) around the linkage peak identified by our previous study.
Result: overall, none of the 14 SNPs were associated with HCC. However, SNP2 was significantly associated with early-onset HCC diagnosed between 41-50 years of age (P=.0003) this association remained statistically significant even after adjusting multiple comparisons by use of calculating false discovery rate. Haplotype analysis revealed that haplotype SNP1-SNP2 was associated with HCC diagnosed between 41-50 years of age (P=.0006), and SNP8-SNP9 was associated with HCC diagnosed at age >60 (P=0.0009).
Conclusions: We found haplotypes SNP1-SNP2 and SNP8-SNP9 were significantly associated with HCC. Further association study with a higher density of markers, which focused on a broader chromosomal region, is warranted.

並列關鍵字

HCC ； 4q ； fine mapping

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