Innovation not only makes a breakthrough or is just a novelty, but its goal lies in the creation of the value. Besides, the innovation of school organization is to get rid of the traditional old thought, and make the brand-new atmosphere and achievement to develop the school characteristic, break through the difficult position of school in existence, and achieve educational goal of school. This article searches the new atmosphere of school organizational innovation and some of the related researches. Then it proposes specifically the feasible suggestions and expects to promote the school organization to build the new atmosphere of innovation.