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研究生: 林郁樺
Lin, Yu-Hua
論文名稱: 使用液相層析串聯式質譜尋找醣基轉移酶GALNT14的新穎受質之醣蛋白體學研究
Glycoproteome-wide Identifications of Novel GALNT14 Substrates Using Tandem Mass Spectrometry
指導教授: 陳頌方
Chen, Sung-Fang
學位類別: 碩士
Master
系所名稱: 化學系
Department of Chemistry
論文出版年: 2017
畢業學年度: 105
語文別: 中文
論文頁數: 83
中文關鍵詞: GALNT14肝癌醣基化蛋白質凝集素親和性層析質譜
英文關鍵詞: GALNT14, hepatocellular carcinoma, glycoprotein, lectin affinity chromatography, mass spectrometry
DOI URL: https://doi.org/10.6345/NTNU202202866
論文種類: 學術論文
相關次數: 點閱:33下載:8
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  • 多肽氨端乙酰基半乳糖轉移酶14 (GALNT14)的基因型近幾年來被發現與許多癌症腫瘤的發生和其對治療後的反應相關。這些癌症種類包括肝癌、膽管癌、大腸癌、食道癌、神經母細胞瘤和乳癌。特別是從台灣900多例病患中發現GALNT14的基因型可作為預測肝癌化療療效反應的標記。然而,除了在癌細胞外緣負責傳遞凋亡訊號的死亡受體 (DR) 5外,我們並不清楚GALNT14的其他受質。於是,本研究的目標為,從醣蛋白體學的層面,透過凝集素親和性管柱再搭配高效能液相層析串聯式質譜儀 (HPLC-MS/MS) 來尋找出可能為GALNT14受質的醣基化蛋白質。首先,將GALNT14嵌入Huh7、J7和Mahlavu這三株人類肝癌細胞株內,使其穩定表達GALNT14,另外還有三株一樣的人類肝癌細胞株,但是並無嵌入GALNT14,作為對照組。接下來通過自製的凝集素親和性管柱純化出特定的醣基化蛋白質,其中凝集素是選用花生凝集素(PNA)與碗豆凝集素 (VVA)。使用胰蛋白酶將純化出的醣基化蛋白水解成生肽後進入高效能液相層析質譜儀分析。在結果中,扣除掉對照組重複鑑定到的蛋白質,三個細胞株搭配兩種凝集素,一共鑑定出305種醣基化蛋白質。我們發現這些醣基化蛋白質與核醣體這條路徑極為相關,其中許多蛋白質也清楚地顯示出與肝癌的相關性。因此本篇研究成功的進一步了解GALNT14與癌症的關聯,對未來要了解詳細致癌機制開啟了一個新視野。

    The glycosyltransferase GALNT14 was recently shown to mediate the oncogenesis and treatment responses of multiple cancers, including hepatocellular carcinoma, cholangiocarcinoma, colon cancer, esophageal cancer, neuroblastoma and breast cancer. Particularly, the genotype of GALNT14 was tightly associated to the therapeutic response of hepatocellular carcinoma in an accumulation of more than 900 patients treated in Taiwan. However, the substrates of GALNT14 are not entirely known, except the death receptor (DR) 5 which mediates the extrinsic apoptosis signaling of cancer cells. We aim to investigate novel substrates of GALNT14 using a lectin enrich glycoproteome-wide screening method combined with high performance liquid chromatography – tandem mass spectrometry (HPLC-MS/MS). The GALNT14 genomic DNA was cloned to plasmids which were then transfected to the hepatocellular carcinoma cell line including Huh7, J7 and Mahlavu, for generating stable GALNT14 overexpression cell lines. Their corresponded control cell lines were also established with only the plasmid backbone without the GALNT14 DNA. Glycoproteins of the three cell lines were captured using self-made lectin affinity column, which was packed with Peanut Agglutin lectin (PNA) or Vicia Villosa Lectin (VVA). The captured proteins were following by trypsin digestion and high performance liquid chromatography – tandem mass spectrometric analyses. In summary, 305 glycoproteins were identified in GALNT14 overexpressed cells but not in the control cells. They are found to be involved in ribosome pathway and clearly shown to be associated with hepatocellular carcinoma. Therefore, this study successfully demonstrated the relation between GALNT14 and cancers, and could pave the way for a deeper understanding of carcinogenesis studies.

    目錄 I 圖目錄 III 表目錄 V Abstract VI 中文摘要 VIII 第一章 前言 1 第一節 肝癌細胞 1 ( 一 ) GALNT14 2 ( 二 ) 與GALNT14-rs9679162相關之臨床文獻探討 4 第二節 親和性層析 6 ( 一 ) 凝集素親和性層析 7 第三節 質譜儀技術 9 ( 一 ) 電噴灑游離法 10 ( 二 ) 串聯質譜分析 11 第四節 蛋白質身份鑑定 12 ( 一 ) 胜肽碎片指紋比對 12 第五節 研究動機與目的 14 第二章 實驗材料 16 第一節 實驗樣品 16 第二節 實驗藥品 16 第三節 實驗試劑 17 第四節 儀器設備 17 第五節 實驗耗材 18 第三章 實驗方法 19 第一節 流程圖 19 第二節 萃取蛋白質 19 第三節 凝集素親和性層析 20 第四節 透析 23 第五節 蛋白質定量 24 第六節 蛋白質酵素水解 25 第七節 碳18離心管柱去鹽 26 第八節 奈流液相層析串聯式質譜儀分析 28 ( 一 ) 奈流液相層析管柱製備 28 ( 二 ) 奈流液相層析 29 ( 三 ) 電噴灑游離串聯式質譜 30 ( 四 ) 搜尋引擎與資料庫鑑定 31 第四章 結果與討論 32 第一節 GALNT14受質候選蛋白 32 第二節 生物路徑 33 第三節 核醣體蛋白質 38 第四節 真核轉譯起始因子 42 第五節 位點預測 45 第五章 結論與未來展望 49 參考文獻 51 附表 54

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