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研究生: 紀佳君
Chi, Chia-Chun
論文名稱: 枯草芽孢桿菌E20促進白蝦免疫路徑之研究
Study on the immunoregulation pathway of white shrimp, Litopenaeus vannamei after the oral-administration of probiotic Bacillus subtilis E20
指導教授: 劉俊宏
Liu, Chun-Hung
學位類別: 碩士
Master
系所名稱: 農學院 - 水產養殖系所
Department of Aquaculture
畢業學年度: 106
語文別: 中文
論文頁數: 79
中文關鍵詞: 枯草芽孢桿菌E20白蝦免疫麩醯胺酸醣基化熱休克蛋白70
外文關鍵詞: Bacillus subtilis E20, Litopenaeus vannamei, immunity, glutamine, glycosylation, heat shock protein 70
DOI URL: http://doi.org/10.6346/THE.NPUST.AQ.001.2018.D08
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  • 本研究為了解枯草芽孢桿菌 E20 (Bacillus subtilis E20)調節白蝦免疫之機制,因此本實驗分為兩組,分別為不添加 B. subtilis E20的控制組及含109 CFU kg-1 B. subtilis E20的益生菌組 (E20),並投餵白蝦八週後,採集肝胰腺並利用氫譜核磁共振對水溶性代謝物進行分析。結果顯示共有18種代謝產物被指認,其中有4種代謝產物有顯著差異 (p<0.05),分別為副黃嘌呤、3-甲基黃嘌呤、肌酸酐及麩醯胺酸,而經由逆向高效液相層析儀及分光光度計確認後,這4種代謝產物的含量於 E20組中皆顯著高於控制組 (p<0.05)。另一方面,透過次世代定序對兩組白蝦肝胰腺進行轉錄體差異分析,發現 E20組中有許多免疫相關基因表現量顯著高於控制組,如超氧化物歧化酶、絲裂原活化激酶及其上游激酶、溶菌酶、熱休克蛋白70等。此外,E20組中的醣基化路徑相關基因表現量亦有顯著增加或相對控制組有增加趨勢,經由即時聚合酶連鎖反應確認相關基因之表現,發現醣基化路徑相關基因表現包括 Glutamine fructose-6-phosphate aminotransferase及UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase以E20組明顯高於控制組 (p<0.05)。綜合代謝物及轉錄體的分析結果可知,肝胰腺中麩醯胺酸含量增加,可使白蝦體內醣基化基質增加,進而提升白蝦體內蛋白質被醣基化的比率。其中,對免疫相當重要的熱休克蛋白70及熱休克轉錄因子,經即時聚合酶連鎖反應及西方墨點法證實,熱休克蛋白70及熱休克轉錄因子的表現量於 E20組中皆有顯著的增加 (p<0.05)。此外,消化率實驗中,E20組的白蝦對所有胺基酸的吸收皆有提升,其中麩醯胺酸則有顯著性的增加。總結來說,B. subtilis E20可能透過促進白蝦對麩醯胺酸的吸收,進而促進蛋白醣基化的表現,以增加肝胰腺中被醣基化之蛋白量,如熱休克蛋白70等,進而提升白蝦免疫力。

    This study examined the mechanisms of action of Bacillus subtilis E20 in activating the immunity of shrimp via dietary administration. The white shrimp were firstly divided into two groups, one group was fed a control diet (a basal diet) and the other fed an E20-containing diet (a basal diet with 109 CFU kg-1 of B. subtilis E20 added). After the 8-week feeding regimen, the composition of hepatopancreas metabolite in shrimp were investiagted using 1H nuclear magnetic resonance (1H NMR) based metabolomic analysis. Results from the 1H NMR analysis revealed that 18 hepatopancreatic metabolites were matched and identified among treatments, of which 4 metabolites were significantly different (p<0.05). In addition, after performing the reverse-phase high-performance liquid chromatography (RP-HPLC) and spectrophotometric analyses, 4 metabolites have been confirmed including hypoxanthine, 3-methylxanthine, creatinine, and glutamine. On the other hand, results from transcriptome analysis indicated a significant increases in immune-related gene expressions in the hepatopancreas of E20-fed shrimp, including superoxidase dismutase (SOD), mitogen-activated protein kinase (MAPK), MAPK kinase 7, lysozyme, and heat shock protein 70 (HSP70). Interestingly, the real-time ploymerase chain reaction (Q-PCR) were also employed to find that glycosylation pathway-related genes, that are able to bind glutamine, in the E20 group increased significantly as compared with the control (p<0.05), including glutamine fructose-6-phosphate aminotransferase (GFPT) for transfer of amino groups on the substrate, and UDP-N-acetylglucosamine-peptide N-acetylglucosaminyl transferase. Both 1H NMR metabolomic-based and next generation sequencing (NGS) analyses demonstrated that increased glutamate in the hepatopancreas may lead to increase of the glycosylation of foodstuff, resulting in increased the rate of protein glycosylation in shrimp. Results from Q-PCR analysis also substantiated that mRNA expression of HSP70 in hepatopancreas of E20-fed shrimp was significantly higher than that of the control (p<0.05). Moreover, the digestibility experiments were conducted, showing that E20-fed shrimp used all glutaric acid then siginicantly converted into glutamate in hepatopancrease. In conclusion, B. subtilis E20 may increase the absorption of glutamine, thereby promoted the process of glycosylation, resulting in increase of the content of glycosylated HSP70 in the hepatopancreas, and then activating white shrimp immunity.

    目錄
    摘要 I
    Abstract III
    致謝 V
    目錄 VI
    圖目錄引索 X
    表目錄引索 XI
    第一章 前言 1
    第二章 文獻回顧 4
    2.1. 白蝦簡介 4
    2.1.1. 白蝦生物分類及生長環境 4
    2.1.2. 臺灣白蝦養殖現況 4
    2.1.3. 白蝦疾病的防治 5
    2.2. 益生菌 5
    2.2.1. 益生菌的發展 5
    2.2.2. 益生菌的應用 6
    2.2.3. Bacillus subtilis應用於水產養殖 7
    2.3. 核磁共振 (Nuclear magnetic resonance)應用於代謝體學 8
    2.3.1. 代謝體學的重要性 8
    2.3.2. 核磁共振之介紹及應用 8
    2.4. 次世代定序 (Next generation sequencing)應用於轉錄體 9
    2.5. 麩醯胺酸在生物體內的重要性 10
    2.5.1. 胺基酸簡介 10
    2.5.2. 非必需胺基酸的重要性 11
    2.5.3. 麩醯胺酸與動物健康的關係及促進動物體蛋白質O型醣基化之反應 11
    2.6. 熱休克蛋白 14
    第三章 材料與方法 15
    3.1. 實驗架構 15
    3.2. 實驗動物 15
    3.3. 實驗飼料製作 16
    3.3.1. 菌種培養及菌粉製作 16
    3.3.2. 飼料配製 16
    3.4. 利用氫譜核磁共振分析白蝦肝胰腺之代謝產物 21
    3.4.1. 樣本製備 21
    3.4.2. 氫譜核磁共振分析條件及數據分析 21
    3.5. 代謝產物的確認 21
    3.5.1. 游離態麩醯胺酸 (Glutamine)及麩胺酸(Glutamate)含量分析 21
    3.5.2. 咖啡因 (Caffeine)含量分析 24
    3.5.3. 肌酸酐 (Creatinine)含量分析 25
    3.6. 以次世代定序分析白蝦肝胰腺基因表現 25
    3.6.1. 白蝦肝胰腺總量核醣核酸 (Total ribonucleic acid, Total RNA)萃取 25
    3.6.2. 次世代定序分析 26
    3.6.3. De novo轉錄組裝 26
    3.6.4. 基因表現量分析 26
    3.7. 以即時定量聚合酶連鎖反應進行基因表現量確認分析 26
    3.7.1. 白蝦肝胰腺總量核糖核酸之萃取 26
    3.7.2. 互補去氧核醣核酸 (Complementary deoxyribonucleic acid)的合成 27
    3.7.3. 即時定量聚合酶連鎖反應 27
    3.8. 西方點墨法 29
    3.8.1. 蛋白質萃取 29
    3.8.2. 蛋白質電泳 29
    3.8.3. 轉印 29
    3.8.4. 免疫反應 30
    3.9. 白蝦攝食 B. subtilis E20飼料後之表觀消化率分析 31
    3.9.1. 實驗設計及飼料製作 31
    3.9.2. 鉻濃度之測定 34
    3.9.3. 水解胺基酸的測定 34
    3.9.4. 粗蛋白測定 34
    3.9.5. 消化率之計算 35
    3.10. 統計分析 35
    第四章 結果 36
    4.1. 氫譜核磁共振分析攝食B. subtilis E20之白蝦肝胰腺代謝物的改變 36
    4.2. 白蝦肝胰腺中代謝產物濃度之確認 40
    4.3. 次世代定序及即時定量聚合酶連鎖反應分析結果 44
    4.4. 西方墨點法分析白蝦肝胰腺中熱休克蛋白、熱休克轉錄因子及O型醣基化之結果 49
    4.5. 藉由三氧化二鉻測定白蝦之消化率 52
    第五章 討論 54
    第六章 結論 59
    參考文獻 60
    作者簡介 79

    參考文獻
    貴萬真,2014,使用含豆粉及蚯蚓粉的發酵混和原料取代白蝦飼料中之魚粉可行性。國立屏東科技大學水產養殖系碩士論文。
    Ackerman A., Iwama G.K., 2001, Physiological and cellular response of juvenile rainbow trout to vibriosis. Journal of Aquatic Animal Health, 13: 173-180.
    Adel M., Lazado C.C., Safari R., Yeganeh S., Zorriehzahra M.J., 2017, Aqualase®, a yeast‐based in‐feed probiotic, modulates intestinal microbiota, immunity and growth of rainbow trout Oncorhynchus mykiss. Aquaculture research, 48: 1815-1826.
    Aguilar-Macias O.L., Ojeda-Ramirez J.J., Campa-Cordova A.I., Saucedo P.E., 2010, Evaluation of natural and commercial probiotics for improving growth and survival of the pearl oyster, Pinctada mazatlanica, during late hatchery and early field culturing. Journal of the World Aquaculture Society, 41: 447-454.
    Alam M.S., Teshima S., Koshio S., Ishikawa M., Uyan O., Hernandez L.H.H., Michael F.R., 2005, Supplemental effects of coated methionine and/or lysine to soy protein isolate diet for juvenile kuruma shrimp, Marsupenaeus japonicus. Aquaculture, 248: 13-19.
    Aly S.M., Ahmed Y.A.G., Ghareeb A.A.A., Mohamed M.F., 2008, Studies on Bacillus subtilis and Lactobacillus acidophilus, as potential probiotics, on the immune response and resistance of Tilapia nilotica (Oreochromis niloticus) to challenge infections. Fish & Shellfish Immunology, 25: 128-136.
    Aminu N., Chan S.Y., Khan N.H., Farhan A.B., Umar M.N., Toh S.M., 2018, A simple stability-lndicating HPLC method for simultaneous analysis of paracetamol and caffeine and its application to determinations in fixed-dose combination tablet dosage form. Acta Chromatographica, dio: 10.1556/1326.2018.00354.
    Antunes-Fernandes E.C., van Gastelen S., Dijkstra J., Hettinga K.A., Vervoort J., 2016, Milk metabolome relates enteric methane emission to milk synthesis and energy metabolism pathways. Journal of Dairy Science, 99: 6251-6262.
    AOAC, Official Methods of Analysis of the Association of Official Analytical Chemists International, 16th ed., Association of Official Analytical Chemists, Arlington VA., 1995.
    Arnal J.F., Munzel T., Venema R.C., James N.L., Bai C., Mitch W.E., Harrison D.G., 1995, Interactions between L-arginine and L-glutamine change endothelial NO production. Journal of Clinical Investigation, 95: 2565-2572.
    Aslani B.A., Ghobadi S., 2016, Studies on oxidants and antioxidants with a brief glance at their relevance to the immune system. Life Sciences, 146: 163-173.
    Baker-LePain J.C., Reed R.C., Nicchitta C.V., 2003, ISO: a critical evaluation of the role of peptides in heat shock/chaperone protein-mediated tumor rejection. Current Opinion in Immunology, 15: 89-94.
    Balcázar J.L., Rojas-Luna T., 2007, Inhibitory activity of probiotic Bacillus subtilis UTM 126 against Vibrio species confers protection against vibriosis in juvenile shrimp (Litopenaeus vannamei). Current Microbiology, 55: 409-412.
    Beckonert O., Keun H.C., Ebbels T.M.D., Bundy J., Holmes E., Lindon J.C., Nicholson J.K., 2007, Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts. Nature Protocols, 2: 2692-2703.
    Behjati S., Tarpey P.S., 2013, What is next generation sequencing? Archives of Disease in Childhood, Education and Practice Edition, 98: 236-238.
    Berg J.M., Tymoczko J.L., Stryer L., 2018, Biochemistry, The michaelis-menten model accounts for the kinetic properties of many enzymes. 7, W.H. Freeman, 1514.
    Bhutia Y.D., Ganapathy V., 2016, Glutamine transporters in mammalian cells and their functions in physiology and cancer. Biochimica et Biophysica Acta, 1863: 2531-2539.
    Bray W.A., Lawrence A.L., Leung-Trujillo J.R., 1994, The effect of salinity on growth and survival of Penaeus vannamei, with observations on the interaction of IHHN virus and salinity. Aquaculture, 122: 133-146.
    Calder P.C., Yaqoob P., 1999, Glutamine and the immune system. Amino Acids, 17: 227-241.
    Cheng L., Lin W.H., Wang P.C., Tsai M.A., Hsu J.P., Chen S.C., 2013, White spot syndrome virus epizootic in cultured Pacific white shrimp Litopenaeus vannamei (Boone) in Taiwan. Journal of Fish Diseases, 36: 977-985.
    Chen J., Li C., Huang R., Du F., Liao L., Zhu Z., Wang Y., 2012, Transcriptome analysis of head kidney in grass carp and discovery of immune-related genes. BMC Veterinary Research, 8: 108.
    Chiu K.H., Ding S., Chen Y.W., Lee C.H., Mok H.K., 2011, A NMR-based metabolomic approach for differentiation of hagfish dental and somatic skeletal muscles. Fish Physiology and Biochemistry, 37: 701-707.
    Chiu S.T., Wong S.L., Shiu Y.L., Chiu C.H., Guei W.C., Liu C.H., 2016, Using a fermented mixture of soybean meal and earthworm meal to replace fish meal in the diet of white shrimp, Penaeus vannamei (Boone). Aquaculture Research, 47: 3489-3500.
    Cruz P.M., Ibáñez A.L., Hermosillo O.A.M., Saad H.C.R., 2012, Use of probiotics in aquaculture. ISRN Microbiology, 2012: 916845.
    Cui Z., Liu Y., Luan W., Li Q., Wu D., Wang S., 2010, Molecular cloning and characterization of a heat shock protein 70 gene in swimming crab (Portunus trituberculatus). Fish and Shellfish Immunology, 28: 56-64.
    Deane E.E., Li J., Woo N.Y.S., 2004, Modulated heat shock protein expression during pathogenic Vibrio alginolyticus stress of sea bream. Diseases of Aquatic Organisms, 62: 205-215.
    de Oliveira D.C., da Lima F.S., Sartori T., Santos A.C.A., Rogero M.M., Fock R.A., 2016, Glutamine metabolism and its effects on immune response: molecular mechanism and gene expression. Nutrire, 41: 14.
    Douillet P.A., Langdon C.J., 1994, Use of probiotic for the culture of larvae of the Pacific oyster (Crassostrea gigas Thurnberg). Aquaculture, 119: 25-40.
    Dumas M.E., Maibaum E.C., Teague C., Ueshima H., Zhou B.F., Lindon J.C., Nicholson J.K., Stamler J., Elliott P., Chan Q., Holmes E., 2006, Assessment of analytical reproducibility of 1H NMR spectroscopy based metabonomics for large-scale epidemiological research: the INTERMAP Study. Analytical Chemistry, 78: 2199-2208.
    Dunn W.B., Broadhurst D.I., Atherton H.J., Goodacre R., Griffin J.L., 2011, Systems level studies of mammalian metabolomes: the roles of mass spectrometry and nuclear magnetic resonance spectroscopy. Chemical Society Reviews, 40: 387-426.
    Du X.L., Edelstein D., Rossetti L., Fantus I.G., Goldberg H., Ziyadeh F., Wu J.. Brownlee M., 2000, Hyperglycemia-induced mitochondrial superoxide overproduction activates the hexosamine pathway and induces plasminogen activator inhibitor-1 expression by increasing Sp1 glycosylation. Proceedings of the National Academy of Sciences of the United States of America, 97: 12222-12226.
    Far H.Z., Saad C.R.B., Daud H.M., Harmin S.A., Shakibazadeh S., 2009, Effect of Bacillus subtilis on the growth and survival rate of shrimp (Litopenaeus vannamei). African Journal of Biotechnology, 8: 3369-3376.
    Fink A.L., 1999, Chaperone-mediated protein folding. Physiological Reviews, 79: 425-449.
    Folch J., Lees M., Sloane Stanley G.H., 1957, A simple method for the isolation and purification of total lipids from animal tissue. Journal of Biological Chemistry, 226: 497-509.
    Forsyth R.B., Candido P.M., Babich S.L., Iwama G.K., 1997, Stress protein expression in coho salmon with bacterial kidney disease. Journal of Aquatic Animal Health, 9: 18-25.
    Fuller R., 1989, Probiotics in man and animals. Journal of Applied Bacteriology, 66: 365-378.
    Furukawa A., Tsukahara H., 1966, On the acid digestion method for the determination of chromic oxide as an index substance in the study of digestibility of fish feed. Bulletin of the Japanese Society for the Science of Fish, 32: 502-506.
    Gao Z., Wu H., Shi L., Zhang X., Sheng R., Yin F., Gooneratne R., 2017, Study of Bacillus subtilis on growth performance, nutrition metabolism and intestinal microflora of 1 to 42 d broiler chickens. Animal Nutrition, 3: 109-113.
    Gibbs B.F., Silva I.G., Prokhorov A., Abooali M., Yasinska I.M., Casely-Hayford M. A., Berger S.M., Fasler-Kan E., Sumbayev V.V., 2015, Caffeine affects the biological responses of human hematopoietic cells of myeloid lineage via downregulation of the mTOR pathway and xanthine oxidase activity. Oncotarget, 6: 28678-28692.
    Gibson L.F., Woodworth J., George A.M., 1998, Probiotic activity of Aeromonas media on the Pacific oyster, Crassostrea gigas, when challenged with Vibrio tubiashii. Aquaculture, 169: 111-120.
    Giri S.S., Sen S.S., Sukumaran V., 2012, Effects of dietary supplementation of potential probiotic Pseudomonas aeruginosa VSG-2 on the innate immunity and disease resistance of tropical freshwater fish, Labeo rohita. Fish & Shellfish Immunology, 32: 1135-1140.
    Gong J., Jing L., 2011, Glutamine induces heat shock protein 70 expression via O-GlcNAc modification and subsequent increased expression and transcriptional activity of heat shock factor-1. Minerva Anestesiologica, 77: 488-495.
    Gribbestad I.S., Sitter B., Lundgren S., Krane J., Axelson D., 1999, Metabolite composition in breast tumors examined by proton nuclear magnetic resonance spectroscopy. Anticancer Research, 19:1737-1746.
    Guarner F., Schaafsma G.J., 1998, Probiotics. International Journal of Food Microbiology, 39 : 237-238.
    Hai N.V., 2015, The use of probiotics in aquaculture. Journal of Applied Microbiology, 119: 917-935.
    Hamrita B., Chahed K., Kabbage M., Guillier C.L., Trimeche M., Chaïeb A., Chouchane L., 2008, Identification of tumor antigens that elicit a humoral immune response in breast cancer patients' sera by serological proteome analysis (SERPA). Clinica Chimica Acta, 393: 95-102.
    Hardi E.H., Kusuma I.W., Suwinarti W., Saptiani G., Agustina, 2016, Antagonistic activity of extra cellular product and component bacteria of Pseudomonas sp. against Aeromonas hydrophila from tilapia aquaculture in East Borneo. AIP Conference Proceedings 1755, 130001, doi: 10.1063/1.4958545.
    Hartl F.U., Hayer-Hartl M., 2002, Molecular chaperones in the cytosol: from nascent chain to folded protein. Science, 295: 1852-1858.
    Hecker M., Mitchell J.A., Swierkosz T.A., Sessa W.C., Vane J.R., 1990, Inhibition by L-glutamine of the release of endothelium-derived relaxing factor from cultured endothelial cells. British Journal of Pharmacology, 101: 237-239.
    Huynha T.G., Cheng A.C., Chi C.C., Chiu K.H., Liu C.H., 2018, A synbiotic improves the immunity of white shrimp, Litopenaeus vannamei: Metabolomic analysis reveal compelling evidence. Fish and Shellfish Immunology, 79: 284-293.
    Interaminense J.A., Vogeley J.L., Gouveia C.K., Portela R.W.S., Oliveira J.P., Andrade H.A., Peixoto S.M., Soares R.B., Buarque D.S., Bezerra R.S., 2018, In vitro and in vivo potential probiotic activity of Bacillus subtilis and Shewanella algae for use in Litopenaeus vannamei rearing. Aquaculture, 488: 114-122.
    Jaattela M., 1999, Heat shock proteins as cellular lifeguards. Annals of Medicine, 31: 261-271.
    Jimenez-Botello L.C., Castilla-Cortazar I., Garcia-Magarino M., RiosPerez A.D., Avila-Vazquez R., Picazo-Picazo O., 2018, Increased free locomotor activity in rats after intraperitoneal injection of 1-Methylxanthine versus caffeine: a comparative study. Parkinsonism and Related Disorders, 46: 38-46.
    Kim S.W., Mateo R.D., Yin Y.L., Wu G.Y., 2007, Functional amino acids and fatty acids for enhancing production performance of sows and piglets. Asian-Australasian Journal of Animal Sciences, 20: 295-306.
    Liao X., Cheng L., Xu P., Lu G., Wachholtz M., Sun X., Chen S., 2013, Transcriptome analysis of crucian carp (Carassius auratus), an important aquaculture and hypoxia-tolerant species. PLoS ONE, 22, 8: e62308.
    Li J.Q., Tan B.P., Mai K.S., Ai Q.H., Zhang W.B., Liufu Z.G., Xu W., 2008, Immune responses and resistance against Vibrio parahaemolyticus induced by probiotic bacterium Arthrobacter XE-7 in Pacific white shrimp, Litopenaeus vannamei. Journal of the World Aquaculture Society, 39: 477-489.
    Lindquist S., 1986, The heat-shock response. Annual Review of Biochemistry, 55: 1151-1191.
    Lindquist S., Craig E.A., 1988, The heat-shock proteins. Annual Review of Genetics, 22: 631-677.
    Lin H.L., Shiu Y.L., Chiu C.S., Huang S.L., Liu C.H., 2017, Screening probiotic candidates for a mixture of probiotics to enhance the growth performance, immunity, and disease resistance of Asian seabass, Lates calcarifer (Bloch), against Aeromonas hydrophila. Fish & Shellfish Immunology, 60: 474-482.
    Liu C.H., Chen Y.H., Shiu Y.L., 2013, Molecular characterization of two trypsinogens in the orange-spotted grouper, Epinephelus coioides, and their expression in tissues during early development. Fish Physiology and Biochemistry, 39: 201-214.
    Liu C.H., Chiu C.S., Ho P.L., Wang S.W., 2009, Improvement in the growth performance of white shrimp, Litopenaeus vannamei, by a protease-producing probiotic, Bacillus subtilis E20, from natto. Journal of Applied Microbiology, 107: 1031-1041.
    Liu C.H., Wu K., Chu T.W., Wu T.M., 2018, Dietary supplementation of probiotic, Bacillus subtilis E20, enhances the growth performance and disease resistance against Vibrio alginolyticus in parrot fish (Oplegnathus fasciatus). Aquaculture International, 26: 63-74.
    Liu K.F., Chiu C.H., Shiu Y.L., Cheng W., Liu C.H., 2010, Effects of the probiotic, Bacillus subtilis E20, on the survival, development, stress tolerance, and immune status of white shrimp, Litopenaeus vannamei larvae. Fish & Shellfish Immunology, 28: 837-844.
    Livak K.J., Schmittgen T.D., 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2–ΔΔCt Method. Methods, 25: 402-408.
    Li J., Qian X., Sha B., 2009, Heat shock protein 40: Structural studies and their functional implications. Protein and Peptide Letters, 16: 606-612.
    Li P., Yin Y.L., Li D.F., Kim S.W., Wu G.Y., 2007, Amino acids and immune function. British Journal of Nutrition, 98: 237-252.
    Li X., Bazer F.W., Gao H., Jobgen W., Johnson G.A., Li P., McKnight J.R., Satterfield M.C., Spencer T.E., Wu G., 2009, Amino acids and gaseous signaling. Amino Acids, 37: 65-78.
    Looi K.S., Nakayasu E.S., Diaz R.A., Tan E.M., Almeida I.C., Zhang J.Y., 2008, Using proteomic approach to identify tumor associated antigens as markers in hepatocellular carcinoma. Journal of Proteome Research, 7: 4004-4012.
    López-Cervantes J., Sánchez-Machado D.I., Rosas-Rodríguez J.A., 2006, Analysis of free amino acids in fermented shrimp waste by high-performance liquid chromatography. Journal of Chromatography A, 1105: 106-110.
    Lyons P.P., Turnbull J.F., Dawson K.A., Crumlish M., 2017, Exploring the microbial diversity of the distal intestinal lumen and mucosa of farmed rainbow trout Oncorhynchus mykiss (Walbaum) using next generation sequencing (NGS). Aquaculture Research, 48: 77-91.
    Mahdhi A., Kamoun F., Messina C., Santulli A., Bakhrouf A., 2012, Probiotic properties of Brevibacillus brevis and its influence on sea bass (Dicentrarchus labrax) larval rearing. African Journal of Microbiology Research, 6: 6487-6495.
    Meininger C. J., Wu G., 1997, L-Glutamine inhibits nitric oxide synthesis in bovine venular endothelial cells. Journal of Pharmacology and Experimental Therapeutics, 281: 448-453.
    Menz A., Blake B.F., 1980, Experiments on the growth of Penaeus vannamei Boone. Journal of Experimental Marine Biology and Ecology, 48: 99-111.
    Miller A.L., 1999, Immunonutrition in critically ill patients: a systematic review and analysis of the literature. Journal of Clinical Therapeutic, 4: 239-248.
    Min H., Youn E., Kawasaki I., Shim Y.H., 2017, Caffeine-induced food-avoidance behavior is mediated by neuroendocrine signals in Caenorhabditis elegans. BMB Reports, 50: 31-36.
    Mohapatra S., Chakraborty T., Prusty A.K., Kumar K., Prasad K.P., Mohanta K.N., 2012, Fenvalerate induced stress mitigation by dietary supplementation of multispecies probiotic mixture in a tropical freshwater fish, Labeo rohita (Hamilton). Pesticide Biochemistry and Physiology, 104: 28-37.
    Myers D., 2007, Probiotics. Journal of Exotic Pet Medicine,16: 195-197.
    Newaj-Fyzul A., Adesiyun A.A., Mutani A., Ramsubhag A., Brunt J., Austin B., 2007, Bacillus subtilis AB1 controls Aeromonas infection in rainbow trout (Oncorhynchus mykiss, Walbaum). Journal of Applied Microbiology, 103: 1699-1706.
    Ng T.H., Chiang Y.A., Yeh Y.C., Wang H.C., 2014, Review of Dscam-mediated immunity in shrimp and other arthropods. Developmental & Comparative Immunology, 46: 129-138.
    Özogul F., Anthony Taylor K.D., Quantick Peter C., Özogul Y., 2000, A rapid HPLC-determination of ATP-related compounds and its application to herring stored under modified atmosphere. International Journal of Food Science & Technology, 35: 549-554.
    Padmavathi P., Sunitha K., Veeraiah K., 2012, Efficacy of probiotics in improving water quality and bacterial flora in fish ponds. African Journal of Microbiology Research, 6: 7471-7478.
    Parker R.B., 1974, Probiotics, the other half of the antibiotics story. Animal Nutrition Health, 29: 4-8.
    Pereira R.T., Rosa P.V., Gatlin III D.M., 2017, Glutamine and arginine in diets for Nile tilapia: Effects on growth, innate immune responses, plasma amino acid profiles and whole-body composition. Aquaculture, 473: 135-144.
    Qin J.G., Mittiga L., Ottolenghi F., 2004, Cannibalism reduction in juvenile barramundi Lates calcarifer by providing refuges and low light. Journal of the World Aquaculture Society, 35: 113-118.
    Qiu X., Davis D.A., 2016, Effects of dietary phytase supplementation on growth performance and apparent digestibility coefficients of Pacific White Shrimp Litopenaeus vannamei. Aquaculture Nutrition, 23: 1-10.
    Queiroz J.F., Boyd C.E., 1998, Effects of a bacterial inoculum in channel catfish ponds. Journal of the World Aquaculture Society, 29: 67-73.
    Quinones M.P., Kaddurah-Daouk R., 2009, Metabolomics tools for identifying biomarkers for neuropsychiatric diseases. Neurobiology of Disease, 35: 165-176.
    Raida M.K., Larsen J.L., Nielsen M.E., Buchmann K., 2003, Enhanced resistance of rainbow trout, Oncorhynchus mykiss (Walbaum), against Yersinia ruckeri challenge following oral administration of Bacillus subtilis and B. licheniformis (BioPlus2B). Journal of Fish Diseases, 26: 495-498.
    Ramírez C., Romero J., 2017, The microbiome of Seriola lalandi of wild and aquaculture origin reveals differences in composition and potential function. Frontiers in Microbiology, 8: 1844.
    Rengpipat S., Rukpratanporn S., Piyatiratitivorakul S., Menasaveta P., 2000, Immunity enhancement in black tiger shrimp (Penaeus monodon) by a probiont bacterium (Bacillus S11). Aquaculture, 191: 271-288.
    Robinette S.L., Holmes E., Nicholson J.K., Dumas M.E., 2012, Genetic determinants of metabolism in health and disease: from biochemical genetics to genome-wide associations. Genome Medicine, 4: 30.
    Salinas I., Dıaz-Rosales P., Cuesta A., Meseguer J., Chabrillon M., Morinigo M.A., Esteban M.A., 2006, Effect of heat-inactivated fish and non-fish derived probiotics on the innate immune parameters of a teleost fish (Sparus aurata L.). Veterinary Immunology and Immunopathology, 111: 279-286.
    Scheidler J., Hricak H., Vigneron D.B., Yu K.K., Sokolov D.L., Huang L.R., Zaloudek C.J., Nelson S.J., Carroll P.R., Kurhanewicz J., 1999, Prostate cancer: localization with three-dimensional proton MR spectroscopic imaging-clinicopathologic study. Radiology, 213: 473-480.
    Schleicher E.D., Weigert C., 2000, Role of the hexosamine biosynthetic pathway indiabetic nephropathy. Kidney International, 58: S13-18.
    Scholz U., Garcia D.G., Riccque D., Cruz S.L.E., Vargas A.F., Latchford J., 1999, Enhancement of vibriosis resistance in juvenile Penaeus vannamei by supplementation of diets with different yeast products. Aquaculture, 176: 271-283.
    Sessa W.C., Hecker M., Mitchell J.A., Vane J.R., 1990, The metabolism of L-arginine and its significance for the biosynthesis of endothelium-derived relaxing factor: L-glutamine inhibits the generation of L-arginine by cultured endothelial cells. Proceedings of the National Academy of Sciences of the United States of America, 87: 8607-8611.
    Shena Y.B., Coffeya M.T., Kima S.W., 2015, Effects of short term supplementation of L-tryptophan and reducing large neutral amino acid along with L-tryptophan supplementation on growth and stress response in pigs. Animal Feed Science and Technology, 207: 245-252.
    Shen W.Y., Fu L.L., Li W.F., Zhu Y.R., 2010, Effect of dietary supplementation with Bacillus subtilis on the growth, performance, immune response and antioxidant activities of the shrimp (Litopenaeus vannamei). Aquaculture Research, 41: 1691-1698.
    Shih F.F., 1985, Analysis of glutamine, glutamic acid and pyroglutamic acid in protein hydrolysates by high-performance liquid chromatography. Journal of Chromatography, 322: 248-256.
    Shiu Y.L., Hsieh S.L., Guei W.C., Tsai Y.T., Chiu C.H., Liu C.H., 2013a, Using Bacillus subtilis E20‐fermented soybean meal as replacement for fish meal in the diet of orange‐spotted grouper (Epinephelus coioides, Hamilton). Aquaculture Research, 46: 1403-1406.
    Shiu Y.L., Wong S.L., Guei W.C., Shin Y.C., Liu C.H., 2013b, Increase in the plant protein ratio in the diet of white shrimp, Litopenaeus vannamei (Boone), using Bacillus subtilis E20‐fermented soybean meal as a replacement. Aquaculture Research, 46: 382-394.
    Smolinska A., Blanchet L., Buydens L.M.C., Wijmenga S.S., 2012, NMR and pattern recognition methods in metabolomics: From data acquisition to biomarker discovery: A review. Analytica Chimica Acta, 750: 82-97.
    Sobolev A.P., Mannina L., Proietti N., Carradori Simone., Daglia M., Giusti A.M., Antiochia R., Capitani D., 2015, Untargeted NMR-based methodology in the study of fruit metabolites. Molecules, 20: 4088-4108.
    Sugahara H., Odamaki T., Fukuda S., Kato T., Xiao J.Z., Abe F., Kikuchi J., Ohno H., 2015, Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community. Scientific Reports, 5: 13548.
    Sung Y.Y., MacRae T.H., 2011, Heat shock proteins and disease control in aquatic organisms. Journal of Aquaculture Research and Development, S2: 006.
    Sunitha K., Krishna P.V., 2016, Efficacy of probiotics in water quality and bacterial biochemical characterization of fish ponds. International Journal of Current Microbiology and Applied Sciences, 5: 30-37.
    Tapiero H., Mathé G., Couvreur P., Tew K.D., 2002, I. Arginine. Biomedicine & Pharmacotherapy, 56: 439-455.
    Tiziani S., Lopes V., Günther U.L., 2009, Early stage diagnosis of oral cancer using 1H NMR-based metabolomics. Neoplasia, 11: 269-276.
    Tsan M.F., Gao B., 2004, Heat shock protein and innate immunity. Cellular & Molecular Immunology, 1: 274-279.
    Tseng D.Y., Ho P.L., Huang S.Y., Cheng S.C., Shiu Y.L., Chiu C.S., Liu C.H., 2009, Enhancement of immunity and disease resistance in the white shrimp, Litopenaeus vannamei, by the probiotic, Bacillus subtilis E20. Fish & Shellfish Immunology, 26: 339-344.
    Valentim Neto P.A., Moser J.R., Fraga A.P.M., Marques M.R.F., 2014, Hsp70 expression in shrimp Litopenaeus vannamei in response to IHHNV and WSSV infection. Virusdisease, 25: 437-440.
    Vanderzant C., Nickelson R., Judkins P.W., 1971, Microbial flora of pond reared brown shrimp (Penaeus aztecus). Applied Microbiology, 21: 915-921.
    Vendrell D., Balcazar J.L., De Blas I., Ruiz-Zarzuela I., Girones O., Muzquiz J.L., 2008, Protection of rainbow trout (Oncorhynchus mykiss) from lactococcosis by probiotic bacteria. Comparative Immunology, Microbiology & Infectious Diseases, 31: 337-345.
    Vinatea L., Olivera A.G., Venero J., Leffler J., Browdy C., 2009, Oxygen consumption of Litopenaeus vannamei juveniles in heterotrophic medium with zero water exchange. Pesquisa Agropecuária Brasileira, 44: 534-538.
    Wang B., Li F., Dong B., Zhang X., Zhang C., Xiang J., 2006, Discovery of the genes in response to white spot syndrome virus (WSSV) infection in Fenneropenaeus chinensis through cDNA microarray. Journal of Marine Biotechnology, 8: 491–500.
    Wang H., Guan W., Yang W., Wang Q., Zhao H., Yang F., Lv X., Li J., 2014, Caffeine inhibits the activation of hepatic stellate cells induced by acetaldehyde via adenosine A2A receptor mediated by the cAMP/PKA/SRC/ERK1/2/P38 MAPK signal pathway. PLOS One, 9: e92482.
    Wang J., Chen L., Li P., Li X., Zhou H., Wang F., Li D., Yin Y., Wu G., 2008, Gene expression is altered in piglet small intestine by weaning and dietary glutamine supplementation. Journal of Nutrition, 138:1025-1032.
    Wang J.H., Zhao L.Q., Liu J.F., Wangv H., Xiao S., 2015, Effect of potential probiotic Rhodotorula benthica D30 on the growth performance, digestive enzyme activity and immunity in juvenile sea cucumber Apostichopus japonicus. Fish & Shellfish Immunology, 43: 330-336.
    Wagner L., Trattner S., Pickova J., Gómez-Requeni P., Moazzami A.A., 2014, 1H NMR-based metabolomics studies on the effect of sesamin in Atlantic salmon (Salmo salar). Food Chemistry, 147: 98-105.
    Wang W., Vinocur B., Shoseyov O., Altman A., 2004, Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends in Plant Science, 9: 244-252.
    Wang Y.B., Gu Q., 2010, Effect of probiotics on white shrimp (Penaeus vannamei) growth performance, and immune response. Marine Biology Research, 6: 327-332.
    Wei Y., Liang M., Mai K., Zheng K., Xu H., 2017, 1H NMR‐based metabolomics studies on the effect of size‐fractionated fish protein hydrolysate, fish meal and plant protein in diet for juvenile turbot (Scophthalmus maximus L.). Aquaculture Nutrition, 23: 523-536.
    Wu G., Meininger C.J., 2002, Regulation of nitric oxide synthesis by dietary factors. Annual Review of Nutrition, 22: 61-86.
    Wu G.Y., Flynn N.E., Yan W., Barstow D.G., 1995, Glutamine metabolism in chick enterocytes: absence of pyrroline-5-carboxylase synthase and citrulline synthesis. Biochemical Journal, 306: 717-721.
    Wyban J., Walsh W.A., Godin D.M., 1995, Temperature effects on growth, feeding rate and feed conversion of the Pacific white shrimp (Penaeus vannamei). Aquaculture, 138: 267-279.
    Xi P., Jiang Z., Dai Z., Li X., Yao K., Zheng C., Lin Y., Wang J., Wu G., 2012, Regulation of protein turnover by l-glutamine in porcine intestinal epithelial cells. Journal of Nutritional Biochemistry, 23: 1012-1017.
    Yi G., Hui L., Yan L., 2016, Effects of Bacillus subtilis on epithelial tight junctions of mice with inflammatory bowel disease. Journal of Interferon & Cytokine Research, dio: 10.1089/jir.2015.0030.
    Yu H., Gao Q., Dong S., Lan Y., Ye Z., Wen B., 2016, Regulation of dietary glutamine on the growth, intestinal function, immunity and antioxidant capacity of sea cucumber Apostichopus japonicus (Selenka). Fish & Shellfish Immunology, 50: 56-65.
    Żarski D., Nguyen T., Cam A.L., Montfort J., Dutto G., Vidal M.O., Fauvel C., Bobe J., 2017, Transcriptomic profiling of egg quality in sea bass (Dicentrarchus labrax) sheds light on genes involved in ubiquitination and translation. Marine Biotechnology, 19: 102-115.
    Zhang P., Zhang X., Li J., Huang G., 2006, The effects of body weight, temperature, salinity, pH, light intensity and feeding condition on lethal DO levels of whiteleg shrimp, Litopenaeus vannamei (Boone, 1931). Aquaculture, 256: 579-587.
    Zheng C.N., Wang Wei, 2017, Effects of Lactobacillus pentosus on the growth performance, digestive enzyme and disease resistance of white shrimp, Litopenaeus vannamei (Boone, 1931). Aquaculture Research, 48: 2767-2777.
    Zhou J., Wang L., Xin Y., Wang W.N., He W.Y., Wang A.L., Liu Y., 2010a, Effect of temperature on antioxidant enzyme gene expression and stress protein response in white shrimp, Litopenaeus vannamei. Journal of Thermal Biology, 35: 284-289.
    Zhou J., Wang W.N., He W.Y., Zheng Y., Wang L., Xin Y., Liu Y., Wang A.L., 2010b, Expression of HSP60 and HSP70 in white shrimp, Litopenaeus vannamei in response to bacterial challenge. Journal of Invertebrate Pathology, 103: 170-178.
    Zhou Q., Jin M., Elmada Z.C., Liang X., Mai K., 2015, Growth, immune response and resistance to Aeromonas hydrophila of juvenile yellow catfish, Pelteobagrus fulvidraco, fed diets with different arginine levels. Aquaculture, 437: 84-91.
    Zokaeifar H., Balcázar J.L., Saad C.R., Kamarudin M.S., Sijam K., Arshad A., Nejat N., 2012, Effects of Bacillus subtilis on the growth performance, digestive enzymes, immune gene expression and disease resistance of white shrimp, Litopenaeus vannamei. Fish & Shellfish Immunology, 33: 683-689.
    Zokaeifar H., Babaei N., Saad C.R., Kamarudin M.S., Sijam K., Balcazar J.L., 2014, Administration of Bacillus subtilis strains in the rearing water enhances the water quality, growth performance, immune response, and resistance against Vibrio harveyi infection in juvenile white shrimp, Litopenaeus vannamei. Fish & Shellfish Immunology, 36, 68-74.

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