After Chen Shui-bian became the President of R.O.C., he declared to push forward Government Reconstruction and established a committee to do through research and provide advice. The committee submitted the first report about the organization reconstruction of Executive Yuan in April 2002, and suggested to reduce the number of the Cabinet departments, to establish three Policy-Coordination Agencies and Independent Establishments. This report received some approval and attention from the government and the citizens. However, after examined this report scientifically, we found out some serious problems at this report. This article expects to point out some problems of this report, especial focuses are on the position of establishment of Policy-Coordination Agencies and Independent Establishments, and their principles of establishment.